Index

_

__init__() (scdemon.graph.adjacency_matrix method) (scdemon.graph.gene_graph method) (scdemon.modules method)

A

adjacency_matrix (class in scdemon.graph)

C

calculate_gene_modules() (scdemon.graph.gene_graph method)

compute_umap() (scdemon.graph.gene_graph method) construct_graph() (scdemon.graph.gene_graph method)

F

find_gene() (scdemon.graph.gene_graph method) (scdemon.modules method)

G

gene_graph (class in scdemon.graph) get_adjacency() (scdemon.graph.adjacency_matrix method) get_k_stats() (scdemon.modules method)

get_module_assignment() (scdemon.graph.gene_graph method) (scdemon.modules method) get_modules() (scdemon.graph.gene_graph method) (scdemon.modules method)

L

layout_graph() (scdemon.graph.gene_graph method)

M

make_graph() (scdemon.modules method) match_genes_to_modules() (scdemon.graph.gene_graph method) module scdemon.graph scdemon.plotting

modules (class in scdemon)

P

plot_df_enrichment() (in module scdemon.plotting) plot_gene_logfc() (in module scdemon.plotting) plot_genes() (in module scdemon.plotting)

plot_heatmap_avgexpr() (in module scdemon.plotting) plot_svd_corr() (in module scdemon.plotting) plot_umap_grid() (in module scdemon.plotting) populate_modules() (scdemon.graph.gene_graph method)

R

recluster_graph() (scdemon.modules method)

S

save_modules() (scdemon.graph.gene_graph method) (scdemon.modules method) scdemon.graph module

scdemon.plotting module setup() (scdemon.modules method)