Plotting

plot_genes

Plot all genes in a graph on a graph or UMAP basis

plot_gene_logfc

Plot logFC for all genes against a specific covariate on a graph or UMAP basis

plot_df_enrichment

Calculate and plot enrichment of sets of genes (e.g. DEGs) against modules.

plot_svd_corr

Plot heatmap of correlation between SVD components and metadata covariates

plot_heatmap_avgexpr

Plot heatmap of modules' average expression against each covariate level

plot_umap_grid

Plot module average expression on the UMAP in a grid