scdemon.plotting.plot_heatmap_avgexpr

scdemon.plotting.plot_heatmap_avgexpr(obj, graph_id, covariate_list=None, attr='leiden', cbar=False, imgdir='./', ext='png')

Plot heatmap of modules’ average expression against each covariate level

Parameters:

  • obj (modules) – Object (modules) with graph and modules to plot

  • covariate_list (list) – List of covariates to plot

  • graph_id (str) – Name of graph to plot

  • attr (str) – Name of modules in graph to plot

  • cbar (bool) – Whether to show colorbar on side

  • imgdir (str) – Directory where images will go

  • ext (str) – Extension for image ('png' or 'pdf')