scdemon.plotting.plot_svd_corr

scdemon.plotting.plot_svd_corr(obj, covariate_list, cbar=False, imgdir='./', ext='png')

Plot heatmap of correlation between SVD components and metadata covariates

Parameters:

• obj (modules) – Object (modules) with graph and modules to plot

• covariate_list (list) – List of covariates to plot

• cbar (bool) – Whether to show colorbar on side

• imgdir (str) – Directory where images will go

• ext (str) – Extension for image ('png' or 'pdf')